InterViewer: Dynamic Visualization of Protein-Protein Interactions

Han, Kyungsook and Ju, Byong-Hyon and Park, Jong H. (2002) InterViewer: Dynamic Visualization of Protein-Protein Interactions. In: Graph Drawing 10th International Symposium, GD 2002, August 26-28, 2002, Irvine, CA, USA , pp. 364-365 (Official URL: http://dx.doi.org/10.1007/3-540-36151-0_35).

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Abstract

From the perspective of graph drawing, a protein interaction network is challenging because it is a complicated, nonplanar graph with a large number of edge crossings and because it is a disconnected graph consisting of many connected components with nodes of a wide range of degrees. INTERVIEWER is a system for drawing and exploring protein-protein interaction networks in three-dimensional space. Unique features of INTERVIEWER include: (1) it is much faster than other recent implementations of drawing algorithms; (2) it can be used not only for drawing protein interaction networks but also for simplifying them into different types of networks; and (3) it provides an integrated framework for querying protein interaction databases and directly visualizing the query results.

Item Type:Conference Paper
Additional Information:10.1007/3-540-36151-0_35
Classifications:J Applications > J.999 Others
P Styles > P.060 3D
P Styles > P.999 Others
ID Code:250

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References

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Walshaw, C. A multilevel Algorithm for Force-Directed Graph Drawing. In Proc. 8th Int. Symp. Graph Drawing, LNCS 1984, (2002) 171-182.