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DNA Secondary Structures for Probe Design

Byun, Yanga and Han, Kyungsook (2004) DNA Secondary Structures for Probe Design. [Conference Paper]

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Abstract

Visualizing DNA secondary structures is essential to fast and efficient design of probes for DNA chips. There are several programs available for visualizing single-stranded RNA secondary structures, but these programs cannot be used to draw DNA secondary structures formed by several hundred to thousand primers and target genes. We have developed an algorithm and program for visualizing DNA secondary structures formed by multiple strands. We believe the program will be a valuable tool for designing primers and probes in DNA chips. This work was supported by the Korea Science and Engineering Foundation (KOSEF) under grant R01-2003-000-10461-0.

Item Type:Conference Paper
Classifications:J Applications > J.999 Others
ID Code:624
Deposited By:Selbach, Anna
Deposited On:21 Jul 2005
Last Modified:18 Sep 2008 13:08
Alternative Locations:http://www.springerlink.com/openurl.asp?genre=article&issn=0302-9743&volume=3383&spage=504

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References

1. Lander, E. S.: Array of hope, Nature Genetics 21 (1999) 3-4

2. De Rijk, P., Wuyts J., De Wachter, R.: RnaViz 2: an improved representation of RNA secondary structure. Bioinformatics 19 (2003) 299-300

3. Han, K., Kim,D., Kim, H.-J.: A vector-based method for drawing RNA secondary structure. Bioinformatics 15 (1990) 286-297

4. Matzura, O. and Wennborg, A.: RNAdraw: an integrated programm for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows. Computer Applications in the Biosciences 12 (1996) 247-249

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